_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-10
 Query name: gi|946526321|gb|ALM09356.1| glutathione peroxidase 3 [Penaeus monodon]
 Query range: 33-191  (total 212)

 Target: /data/www-rg/seblastian_results/189367942/tempfiles/temptarget.fasta
 Chromosome: CM007935.1:subseq_82352030,106647_ Strand: +
 Positions:
 -Exon 1  55141        55260
 -Exon 2  55420        55513
 -Exon 3  55919        56049
 -Exon 4  56516        56647

 Redox box: no

Query   DFYQFSAKTLNGSNLIDFEEYRGKVLLVANVATYUGLTIPS <---Intron---> YNQMNALAEYYEGQDFVILGFPCNQFGLQEPG <---Intron
          | |||/|||| / /    |||||||/ |/||/|| ||   <   159bp    > |//|||| | /   /| /||||||||||| |  <   405bp 
Target  SIYDFSAETLNGQS-VPLGIYRGKVLLIVNLATFUGSTIEE                YHRMNALMEMFGDLNFTVLGFPCNQFGLQAPE           
        tatgtaggatagca-gccgatagagccagacgattgtaagg                tcaaagcagatggcatagcgtctactgccgcg           
        ctaatgcactagag-tctgtaggatttttatcctggcctaa                aagtacttattgatatcttgtcgaatgtacc            
        acttcctgcgctgc-ttctccgcggcctccgcccagagagg                ccagcacgagttcccctcgaccctgtttgat            
                                          *                                                                 

Query   ---> ATADELLNGVRYVRPGGGFEPRMTIFQKTQVNGDSEDPIYTFLK <---Intron---> SGCEYTDTDFS--SGLYYEPLRVGDLHWNFEKFLI
           >     | || //|||||||| |/  /| | /||| /|/|// /|| <   466bp    >     | /         |/ |//| |/ ||||||||
Target       VN-HETLNLLKYVRPGGGFVPKFPVFGKIEVNGLNEEPLFAYLK                ESLPYVNPVIGDIKKFYWSPIKVNDIRWNFEKFLI
             ga-cgacaccatgacgggtgcatcgtgaaggagtaggcctgtca                gttctgacgaggaaattttcaagagactatgatca
            ata-aactattaatgcgggttcatcttgatatagtaaacttcata                actcatacttgataatagcctataatggataattt
            gat-taccctcgtagatggtccgctgtcgcgctggtaattcctcg                gtgctgctcaataggccgaccaccttcgctggtac
                                                                                                            

Query   NREGKPVYR
        / /| |  |
Target  DSDGAPFRR
        gtgggctac
        acagcctgg
        tttggtcgg
                 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 259 ; UGA-SECIS: 634

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007935.1:subseq_82352030,106647_ Strand = + Positions = 56907 - 56996
 Found by:  Infernal (score=13.94) Covels (score=20.19)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 2
 Free Energy = -15.92

         ..(((((((..............(((((((((((((((..................)))))))..))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggcca--ggcCuGAUGuu-u-uuucaugaccggc
         ((((((({((.............{[[{(((({((((((..................))))))}..))))}]]}......-.-))})))))))
 target  GUCCUUCAUCAGCAGAGGCAGAGUGACGAUCCCUCAGUAAAUGCAGACUAAAUGCAGCUGAGCUGGAUCUGAUGGAGAA-G-GGAGAAGGAC
                                ****           ^^^                            ****                   
_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-10
 Query name: gi|946526321|gb|ALM09356.1| glutathione peroxidase 3 [Penaeus monodon]
 Query range: 33-133  (total 212)

 Target: /data/www-rg/seblastian_results/189367942/tempfiles/temptarget.fasta
 Chromosome: CM007935.1:subseq_82352030,106647_ Strand: +
 Positions:
 -Exon 1  50000        50119
 -Exon 2  50279        50372
 -Exon 3  50778        50860

 Redox box: no

Query   DFYQFSAKTLNGSNLIDFEEYRGKVLLVANVATYUGLTIPS <---Intron---> YNQMNALAEYYEGQDFVILGFPCNQFGLQEPG <---Intron
          | |||/|||| / /    |||||||/ |/||/|| ||   <   159bp    > |//|||| | /   /| /||||||||||| |  <   405bp 
Target  SIYDFSAETLNGQS-VPLGIYRGKVLLIVNLATFUGSTIEE                YHRMNALMEMFGDLNFTVLGFPCNQFGLQAPE           
        tatgtaggatagca-gccgatagagccagacgattgtaagg                tcaaagcagatggcatagcgtctactgccgcg           
        ctaatgcactagag-tctgtaggatttttatcctggcctaa                aagtacttattgatatcttgtcgaatgtacc            
        acttcctgcgctgc-ttctccgcggcctccgcccagagagg                ccagcacgagttcccctcgaccctgtttgat            
                                          *                                                                 

Query   ---> ATADELLNGVRYVRPGGGFEPRMTIFQK
           >     | || //|||||||| |/  /| |
Target       VN-HETLNLLKYVRPGGGFVPKFPVFGK
             ga-cgacaccatgacgggtgcatcgtga
            ata-aactattaatgcgggttcatcttga
            gat-taccctcgtagatggtccgctgtcg
                                         
 Sequence until next stop: 
ANNNNNNNNNNGGTAAGTTAA
 X  X  X  X  V  S  * 

 Distance CDS-SECIS: 1185 ; UGA-SECIS: 1380

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = CM007935.1:subseq_82352030,106647_ Strand = + Positions = 52046 - 52135
 Found by:  Infernal (score=13.94) Covels (score=20.19)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 2
 Free Energy = -15.92

         ..(((((((..............(((((((((((((((..................)))))))..))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggcca--ggcCuGAUGuu-u-uuucaugaccggc
         ((((((({((.............{[[{(((({((((((..................))))))}..))))}]]}......-.-))})))))))
 target  GUCCUUCAUCAGCAGAGGCAGAGUGACGAUCCCUCAGUAAAUGCAGACUAAAUGCAGCUGAGCUGGAUCUGAUGGAGAA-G-GGAGAAGGAC
                                ****           ^^^                            ****